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Uses of Class
BioinfoFieldExtractor.GenericSequence

Packages that use GenericSequence
BioinfoFieldExtractor   
FuzzingEngine   
FuzzingFunctions   
ProtocolLearner   
 

Uses of GenericSequence in BioinfoFieldExtractor
 

Methods in BioinfoFieldExtractor that return GenericSequence
 GenericSequence GenericSeqConstructor.constructGenericSeq(java.util.ArrayList<java.util.ArrayList<java.lang.Integer>> alignments)
          This function constructs a generic message from a consensus message
 

Uses of GenericSequence in FuzzingEngine
 

Methods in FuzzingEngine that return GenericSequence
 GenericSequence StringForFuzzing.getGenSequence()
           
 

Methods in FuzzingEngine with parameters of type GenericSequence
 FuzzingFunctionReturnPair StringFuzzerEngine.fuzzMessage(GenericSequence genMsg, java.util.ArrayList<java.lang.Integer> origMsg, FSAutomaton automaton, int currentStateID)
          Modifies the message based on the currently active set of fuzzing functions.
 

Constructors in FuzzingEngine with parameters of type GenericSequence
StringForFuzzing(GenericSequence seq)
           
 

Uses of GenericSequence in FuzzingFunctions
 

Methods in FuzzingFunctions with parameters of type GenericSequence
 FuzzingFunctionReturnPair FuzzingFunctionInterface2.fuzzInputMsg(FSAutomaton automaton, int currentStateID, java.util.ArrayList<java.lang.Integer> originalMessage, GenericSequence gms)
          Modifies the input messages
 java.util.ArrayList<java.lang.Integer> FuzzingFunctionSkipValue.fuzzInputMsg(GenericSequence genericMessage, java.util.ArrayList<java.lang.Integer> originalMessage)
           
 java.util.ArrayList<java.lang.Integer> FuzzingFunctionReverseMessageOrder.fuzzInputMsg(GenericSequence genericMessage, java.util.ArrayList<java.lang.Integer> originalMessage)
           
 java.util.ArrayList<java.lang.Integer> FuzzingFunctionMixDataTypes.fuzzInputMsg(GenericSequence genericMessage, java.util.ArrayList<java.lang.Integer> originalMessage)
           
 java.util.ArrayList<java.lang.Integer> FuzzingFunctionInterface.fuzzInputMsg(GenericSequence genericMessage, java.util.ArrayList<java.lang.Integer> originalMessage)
          Modifies the input messages
 java.util.ArrayList<java.lang.Integer> FuzzingFunctionIntegerZero32Bit.fuzzInputMsg(GenericSequence genericMessage, java.util.ArrayList<java.lang.Integer> originalMessage)
           
 java.util.ArrayList<java.lang.Integer> FuzzingFunctionIntegerMin64Bit.fuzzInputMsg(GenericSequence genericMessage, java.util.ArrayList<java.lang.Integer> originalMessage)
           
 java.util.ArrayList<java.lang.Integer> FuzzingFunctionIntegerMin32Bit.fuzzInputMsg(GenericSequence genericMessage, java.util.ArrayList<java.lang.Integer> originalMessage)
           
 java.util.ArrayList<java.lang.Integer> FuzzingFunctionIntegerMax64BitUnsigned.fuzzInputMsg(GenericSequence genericMessage, java.util.ArrayList<java.lang.Integer> originalMessage)
           
 java.util.ArrayList<java.lang.Integer> FuzzingFunctionIntegerMax64Bit.fuzzInputMsg(GenericSequence genericMessage, java.util.ArrayList<java.lang.Integer> originalMessage)
           
 java.util.ArrayList<java.lang.Integer> FuzzingFunctionIntegerMax32BitUnsigned.fuzzInputMsg(GenericSequence genericMessage, java.util.ArrayList<java.lang.Integer> originalMessage)
           
 java.util.ArrayList<java.lang.Integer> FuzzingFunctionIntegerMax32Bit.fuzzInputMsg(GenericSequence genericMessage, java.util.ArrayList<java.lang.Integer> originalMessage)
           
 java.util.ArrayList<java.lang.Integer> FuzzingFunctionInsertRandomSample.fuzzInputMsg(GenericSequence genericMessage, java.util.ArrayList<java.lang.Integer> originalMessage)
           
 java.util.ArrayList<java.lang.Integer> FuzzingFunctionInsertLargeString.fuzzInputMsg(GenericSequence genericMessage, java.util.ArrayList<java.lang.Integer> originalMessage)
           
 java.util.ArrayList<java.lang.Integer> FuzzingFunctionIncreaseStringLength.fuzzInputMsg(GenericSequence genericMessage, java.util.ArrayList<java.lang.Integer> originalMessage)
           
 java.util.ArrayList<java.lang.Integer> FuzzingFunctionIncreaseMaxNumByOne.fuzzInputMsg(GenericSequence genericMessage, java.util.ArrayList<java.lang.Integer> originalMessage)
           
 java.util.ArrayList<java.lang.Integer> FuzzingFunctionDoubleMin32Bit.fuzzInputMsg(GenericSequence genericMessage, java.util.ArrayList<java.lang.Integer> originalMessage)
           
 java.util.ArrayList<java.lang.Integer> FuzzingFunctionDoubleMax32Bit.fuzzInputMsg(GenericSequence genericMessage, java.util.ArrayList<java.lang.Integer> originalMessage)
           
 java.util.ArrayList<java.lang.Integer> FuzzingFunctionDecreaseMinNumByOne.fuzzInputMsg(GenericSequence genericMessage, java.util.ArrayList<java.lang.Integer> originalMessage)
           
 

Uses of GenericSequence in ProtocolLearner
 

Methods in ProtocolLearner that return GenericSequence
 GenericSequence FSATransition.getGenericSequence()
           
 

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