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java.lang.ObjectBioinfoFieldExtractor.PhylogenTree
public class PhylogenTree
This is a generic class implementing a phylogenetic tree. It is used to construct clusters of similar messages for global alignment.
Constructor Summary | |
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PhylogenTree()
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Method Summary | |
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float |
getDistance()
Returns the ditance score between the children |
java.util.ArrayList<java.lang.Integer> |
getGapsToBeInserted()
Returns the array list of gaps |
int |
getHeight()
Returns the height of the tree |
int |
getIndex()
Returns the index |
boolean |
getIsLeaf()
Check if the node is a leaf |
PhylogenTree |
getLeftChild()
Returns the left child |
PhylogenTree |
getParent()
Returns the parent node |
PhylogenTree |
getRightChild()
Returns the right child |
java.util.ArrayList<java.lang.Integer> |
getValue()
Returns the value |
void |
setDistance(float d)
Sets the distance score between the children |
void |
setGapsToBoInserted(java.util.ArrayList<java.lang.Integer> g)
Sets the gaps |
void |
setIndex(int i)
Sets the index |
void |
setLeftChild(PhylogenTree l)
Sets the left child |
void |
setParent(PhylogenTree p)
Sets the parent |
void |
setRightChild(PhylogenTree r)
Sets the right child |
void |
setValue(java.util.ArrayList<java.lang.Integer> newVal)
Sets the value |
Methods inherited from class java.lang.Object |
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equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Constructor Detail |
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public PhylogenTree()
Method Detail |
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public boolean getIsLeaf()
public int getHeight()
public PhylogenTree getParent()
public void setParent(PhylogenTree p)
public PhylogenTree getLeftChild()
public void setLeftChild(PhylogenTree l)
public PhylogenTree getRightChild()
public void setRightChild(PhylogenTree r)
public void setValue(java.util.ArrayList<java.lang.Integer> newVal)
public java.util.ArrayList<java.lang.Integer> getValue()
public void setIndex(int i)
public int getIndex()
public void setDistance(float d)
public float getDistance()
public void setGapsToBoInserted(java.util.ArrayList<java.lang.Integer> g)
public java.util.ArrayList<java.lang.Integer> getGapsToBeInserted()
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