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BioinfoFieldExtractor
Class NeedlemanWunschHolder

java.lang.Object
  extended by BioinfoFieldExtractor.NeedlemanWunschHolder

public class NeedlemanWunschHolder
extends java.lang.Object

Constructor Summary
NeedlemanWunschHolder()
           
 
Method Summary
 java.util.ArrayList<java.lang.Integer> getAlignment1()
           
 java.util.ArrayList<java.lang.Integer> getAlignment2()
           
 java.util.ArrayList<java.lang.Integer> getGapsArrInA1()
           
 java.util.ArrayList<java.lang.Integer> getGapsArrInA2()
           
 int getGapsInAlignment1()
           
 int getGapsInAlignment2()
           
 int getSimilatiryScore()
           
 int getTotalGaps()
           
 void setAlignment1(java.util.ArrayList<java.lang.Integer> a1)
           
 void setAlignment2(java.util.ArrayList<java.lang.Integer> a2)
           
 void setGapsArrInA1(java.util.ArrayList<java.lang.Integer> g)
           
 void setGapsArrInA2(java.util.ArrayList<java.lang.Integer> g)
           
 void setGapsInAlignment1(int g)
           
 void setGapsInAlignment2(int g)
           
 void setSimilatiryScore(int s)
           
 void setTotalGaps(int g)
           
 
Methods inherited from class java.lang.Object
equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

NeedlemanWunschHolder

public NeedlemanWunschHolder()
Method Detail

setAlignment1

public void setAlignment1(java.util.ArrayList<java.lang.Integer> a1)

setAlignment2

public void setAlignment2(java.util.ArrayList<java.lang.Integer> a2)

setTotalGaps

public void setTotalGaps(int g)

setSimilatiryScore

public void setSimilatiryScore(int s)

setGapsInAlignment1

public void setGapsInAlignment1(int g)

setGapsInAlignment2

public void setGapsInAlignment2(int g)

getAlignment1

public java.util.ArrayList<java.lang.Integer> getAlignment1()

getAlignment2

public java.util.ArrayList<java.lang.Integer> getAlignment2()

getTotalGaps

public int getTotalGaps()

getSimilatiryScore

public int getSimilatiryScore()

getGapsInAlignment1

public int getGapsInAlignment1()

getGapsInAlignment2

public int getGapsInAlignment2()

getGapsArrInA1

public java.util.ArrayList<java.lang.Integer> getGapsArrInA1()

getGapsArrInA2

public java.util.ArrayList<java.lang.Integer> getGapsArrInA2()

setGapsArrInA1

public void setGapsArrInA1(java.util.ArrayList<java.lang.Integer> g)

setGapsArrInA2

public void setGapsArrInA2(java.util.ArrayList<java.lang.Integer> g)
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