A B C D E F G H I L M N O P R S T U V W

P

parseProxy(String) - Static method in class socks.Proxy

Parses strings in the form: host[:port:user:password], and creates proxy from information obtained from parsing.

PassiveLearner - Class in ProtocolLearner

A passive synthesis protocol learner that builds Finite State Machine from a set of protocol messages traces

PassiveLearner() - Constructor for class ProtocolLearner.PassiveLearner

PassiveLearner.Loop - Class in ProtocolLearner

PassiveLearner.Loop() - Constructor for class ProtocolLearner.PassiveLearner.Loop

performSmithWatermanAlignment(int[], int[]) - Method in class BioinfoFieldExtractor.LocalAlignment

Smith-Waterman algorithm to perform local alignment of two messages.

PhylogenTree - Class in BioinfoFieldExtractor

This is a generic class implementing a phylogenetic tree.

PhylogenTree() - Constructor for class BioinfoFieldExtractor.PhylogenTree

populateGraphFromFSA(FSAutomaton, int) - Method in class AutoFuzzMain.GuiGraphBuilderFromFSA

A recursive function that add children and edges for a particular state in the FSA

populateGraphFromFSA(FSAutomaton, int, ArrayList<Integer>) - Method in class AutoFuzzMain.GuiGraphBuilderFromFSA

port - Variable in class socks.ProxyMessage

Port field of the request/response

printCluster(PhylogenTree) - Static method in class BioinfoFieldExtractor.BioTester

ProtocolLearner - package ProtocolLearner

Proxy - Class in socks

Abstract class Proxy, base for classes Socks4Proxy and Socks5Proxy.

ProxyAuthenticator - Class in ProxyServer

ProxyAuthenticator() - Constructor for class ProxyServer.ProxyAuthenticator

Creates new instance of the ServerAuthenticatorNone.

ProxyAuthenticator(InputStream, OutputStream) - Constructor for class ProxyServer.ProxyAuthenticator

Constructs new ServerAuthenticatorNone object suitable for returning from the startSession function.

ProxyDataManipulator - Class in ProxyServer

This class provides functionality to manipulate Input/Output streams from the proxy server.

ProxyDataManipulator() - Constructor for class ProxyServer.ProxyDataManipulator

The constructor

ProxyDataManipulator(JTextArea, JTextArea) - Constructor for class ProxyServer.ProxyDataManipulator

ProxyMessage - Class in socks

Abstract class which describes SOCKS4/5 response/request.

ProxyServer - package ProxyServer

ProxyServer - Class in socks

SOCKS4 and SOCKS5 proxy, handles both protocols simultaniously.

ProxyServer(ServerAuthenticator) - Constructor for class socks.ProxyServer

Creates a proxy server with given Authentication scheme.

ProxyServerMain - Class in ProxyServer

This is the main proxy server class that provides functionality to instantiate a proxy server on a given port and start/stop listening.

ProxyServerMain() - Constructor for class ProxyServer.ProxyServerMain

ProxyServerMain(int) - Constructor for class ProxyServer.ProxyServerMain